## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=KI9_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/KI9_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:25:53 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
368146766	368131006	4499177	231269958	83974795	20213951	28175702	0	116426	7106725	0.012222	0.628227	0.228111	0.05491	0.076537	0.856338	0.856302	0.016118	0.45941	0.385922	0.405581	1.01117			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.113832
1	0.214275
2	0.346552
3	0.445655
4	0.501501
5	0.584603
6	0.641077
7	0.69489
8	0.744786
9	0.79577
10	0.839898
11	0.863907
12	0.882978
13	0.910537
14	0.932913
15	0.96093
16	0.97288
17	0.980117
18	0.996481
19	1.008933
20	1.029668
21	1.051496
22	1.070522
23	1.0862
24	1.093269
25	1.102767
26	1.113044
27	1.128222
28	1.143045
29	1.15205
30	1.157117
31	1.172139
32	1.170918
33	1.183393
34	1.19872
35	1.200426
36	1.204256
37	1.223429
38	1.225083
39	1.240087
40	1.245993
41	1.238819
42	1.232268
43	1.226991
44	1.218586
45	1.218688
46	1.219748
47	1.215836
48	1.211988
49	1.210636
50	1.204066
51	1.184648
52	1.184893
53	1.196916
54	1.199087
55	1.194899
56	1.20088
57	1.193175
58	1.197329
59	1.200012
60	1.203169
61	1.207031
62	1.200104
63	1.197228
64	1.201061
65	1.191075
66	1.187768
67	1.168957
68	1.159582
69	1.153944
70	1.15113
71	1.149974
72	1.151724
73	1.148189
74	1.14777
75	1.130521
76	1.113471
77	1.102347
78	1.083002
79	1.056232
80	1.04444
81	1.030674
82	1.017587
83	0.997891
84	0.981395
85	0.964991
86	0.942929
87	0.917098
88	0.898916
89	0.862573
90	0.822061
91	0.786422
92	0.747119
93	0.70237
94	0.705788
95	0.60205
96	0.490338
97	0.413256
98	0.309373
99	0.175036
100	0.064585