Left reads: Input : 6205555 Mapped : 5775047 (93.1% of input) of these: 606395 (10.5%) have multiple alignments (17486 have >20) Right reads: Input : 6205555 Mapped : 5515690 (88.9% of input) of these: 549005 (10.0%) have multiple alignments (17264 have >20) 91.0% overall read mapping rate. Aligned pairs: 5332238 of these: 528088 ( 9.9%) have multiple alignments 59243 ( 1.1%) are discordant alignments 85.0% concordant pair alignment rate.