## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=KI8_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/KI8_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:24:48 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
431096583	431075802	7132133	264467095	99536341	24399168	35544855	0	117563	8212976	0.016545	0.613505	0.230902	0.056601	0.082456	0.844407	0.844366	0.014112	0.447259	0.39193	0.406014	1.048617			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.112093
1	0.212152
2	0.349935
3	0.445105
4	0.495394
5	0.575293
6	0.634845
7	0.696065
8	0.747772
9	0.798123
10	0.840759
11	0.858115
12	0.883894
13	0.909758
14	0.931332
15	0.957497
16	0.969751
17	0.986843
18	1.010429
19	1.026897
20	1.034949
21	1.053247
22	1.077425
23	1.089516
24	1.093463
25	1.105277
26	1.11458
27	1.11729
28	1.13476
29	1.148308
30	1.14437
31	1.16405
32	1.175908
33	1.18034
34	1.191978
35	1.194525
36	1.194865
37	1.203277
38	1.218334
39	1.229811
40	1.232288
41	1.233273
42	1.228745
43	1.220864
44	1.221097
45	1.21838
46	1.220789
47	1.209103
48	1.207677
49	1.203063
50	1.194263
51	1.182091
52	1.181745
53	1.186447
54	1.202289
55	1.208363
56	1.209667
57	1.203574
58	1.212812
59	1.21187
60	1.202095
61	1.200714
62	1.197991
63	1.19489
64	1.191828
65	1.179478
66	1.177397
67	1.167484
68	1.156785
69	1.147428
70	1.150972
71	1.151067
72	1.15572
73	1.142122
74	1.14167
75	1.127975
76	1.107472
77	1.094626
78	1.078944
79	1.061536
80	1.052686
81	1.036977
82	1.027023
83	1.007221
84	0.990812
85	0.978916
86	0.959836
87	0.932749
88	0.908994
89	0.870888
90	0.830207
91	0.793724
92	0.752936
93	0.709075
94	0.713186
95	0.603307
96	0.496246
97	0.418841
98	0.308646
99	0.171225
100	0.064506