Left reads: Input : 6210701 Mapped : 5765284 (92.8% of input) of these: 607375 (10.5%) have multiple alignments (17522 have >20) Right reads: Input : 6210701 Mapped : 5558157 (89.5% of input) of these: 555024 (10.0%) have multiple alignments (17339 have >20) 91.2% overall read mapping rate. Aligned pairs: 5362448 of these: 532154 ( 9.9%) have multiple alignments 58514 ( 1.1%) are discordant alignments 85.4% concordant pair alignment rate.