## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=KI7_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/KI7_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:23:07 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
432187495	432166647	7185404	264800703	99796834	24471836	35915698	0	118364	8225145	0.016626	0.612728	0.230922	0.056626	0.083106	0.84365	0.84361	0.014186	0.446811	0.391719	0.407081	1.037866			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.115567
1	0.212906
2	0.342906
3	0.443047
4	0.490761
5	0.57464
6	0.634325
7	0.696952
8	0.749193
9	0.800136
10	0.847634
11	0.869153
12	0.888962
13	0.913196
14	0.939505
15	0.967266
16	0.980729
17	0.996859
18	1.016129
19	1.034459
20	1.047183
21	1.06324
22	1.071214
23	1.08734
24	1.101592
25	1.114181
26	1.117235
27	1.12196
28	1.138244
29	1.160188
30	1.150152
31	1.162668
32	1.1713
33	1.181418
34	1.194593
35	1.19883
36	1.203081
37	1.219366
38	1.225891
39	1.234252
40	1.236128
41	1.236236
42	1.230707
43	1.214368
44	1.210897
45	1.216179
46	1.220025
47	1.216468
48	1.204782
49	1.203654
50	1.194046
51	1.18259
52	1.184281
53	1.190278
54	1.198289
55	1.201146
56	1.192375
57	1.193273
58	1.200344
59	1.198507
60	1.19925
61	1.191959
62	1.190371
63	1.188919
64	1.196155
65	1.187968
66	1.184985
67	1.176017
68	1.157558
69	1.146189
70	1.145868
71	1.154842
72	1.153212
73	1.134303
74	1.137931
75	1.126186
76	1.11486
77	1.099505
78	1.083789
79	1.060268
80	1.050789
81	1.035259
82	1.019961
83	0.996498
84	0.982494
85	0.96031
86	0.946682
87	0.922499
88	0.901786
89	0.864667
90	0.825925
91	0.790431
92	0.747807
93	0.702671
94	0.709452
95	0.605223
96	0.494953
97	0.416617
98	0.311541
99	0.171402
100	0.06551