Left reads: Input : 6173770 Mapped : 5755123 (93.2% of input) of these: 602016 (10.5%) have multiple alignments (17693 have >20) Right reads: Input : 6173770 Mapped : 5491963 (89.0% of input) of these: 544184 ( 9.9%) have multiple alignments (17482 have >20) 91.1% overall read mapping rate. Aligned pairs: 5328855 of these: 525060 ( 9.9%) have multiple alignments 59557 ( 1.1%) are discordant alignments 85.3% concordant pair alignment rate.