## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=KI6_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/KI6_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:24:38 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
429626081	429605362	7052049	263401970	99205365	24416950	35532774	0	116583	8181931	0.016415	0.613125	0.230922	0.056836	0.08271	0.844048	0.844007	0.014049	0.447262	0.395829	0.408102	1.022489			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.114451
1	0.209912
2	0.341949
3	0.444857
4	0.4974
5	0.575438
6	0.635225
7	0.691673
8	0.745181
9	0.792538
10	0.836306
11	0.863847
12	0.881639
13	0.903635
14	0.928111
15	0.954195
16	0.969503
17	0.986956
18	1.0112
19	1.025687
20	1.03994
21	1.052803
22	1.066169
23	1.082591
24	1.092951
25	1.106751
26	1.114239
27	1.121189
28	1.13376
29	1.144283
30	1.150401
31	1.161902
32	1.171705
33	1.178892
34	1.191342
35	1.199135
36	1.20171
37	1.218975
38	1.226329
39	1.238851
40	1.240141
41	1.237305
42	1.23356
43	1.224978
44	1.231779
45	1.229596
46	1.228441
47	1.219452
48	1.215521
49	1.208776
50	1.19338
51	1.179507
52	1.183764
53	1.188607
54	1.203608
55	1.202669
56	1.19729
57	1.191237
58	1.194955
59	1.194813
60	1.1966
61	1.195217
62	1.192515
63	1.190711
64	1.190622
65	1.178378
66	1.17752
67	1.167193
68	1.151087
69	1.142319
70	1.149081
71	1.155197
72	1.155258
73	1.145352
74	1.139081
75	1.129654
76	1.113171
77	1.097101
78	1.087978
79	1.068781
80	1.061862
81	1.042956
82	1.028752
83	1.010176
84	1.004804
85	0.988101
86	0.962278
87	0.930521
88	0.903307
89	0.864947
90	0.827125
91	0.786421
92	0.745286
93	0.702751
94	0.707006
95	0.601001
96	0.494725
97	0.417952
98	0.311667
99	0.172125
100	0.065819