Left reads: Input : 6114726 Mapped : 5698115 (93.2% of input) of these: 599981 (10.5%) have multiple alignments (17507 have >20) Right reads: Input : 6114726 Mapped : 5449092 (89.1% of input) of these: 542700 (10.0%) have multiple alignments (17270 have >20) 91.2% overall read mapping rate. Aligned pairs: 5284752 of these: 523219 ( 9.9%) have multiple alignments 57763 ( 1.1%) are discordant alignments 85.5% concordant pair alignment rate.