## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=KI5_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/KI5_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:21:15 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
425524694	425503785	7048697	260325162	98470556	24154155	35509086	0	115843	8094933	0.016566	0.611805	0.231421	0.056766	0.083452	0.843226	0.843184	0.014109	0.447153	0.384458	0.398967	1.02614			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.113511
1	0.214016
2	0.344298
3	0.441966
4	0.493818
5	0.574443
6	0.635194
7	0.693433
8	0.742083
9	0.791361
10	0.830568
11	0.857769
12	0.883636
13	0.914752
14	0.940724
15	0.959488
16	0.971835
17	0.985131
18	1.003223
19	1.019629
20	1.034571
21	1.051982
22	1.06853
23	1.079736
24	1.091686
25	1.101662
26	1.10596
27	1.107027
28	1.122576
29	1.138725
30	1.142986
31	1.160726
32	1.166792
33	1.175899
34	1.194786
35	1.196951
36	1.198409
37	1.215878
38	1.226414
39	1.231915
40	1.235499
41	1.226538
42	1.226446
43	1.220801
44	1.222109
45	1.221476
46	1.225776
47	1.220132
48	1.215378
49	1.207711
50	1.199402
51	1.184231
52	1.180619
53	1.18237
54	1.195395
55	1.19572
56	1.192825
57	1.195066
58	1.202504
59	1.200315
60	1.197414
61	1.19391
62	1.186565
63	1.194365
64	1.194951
65	1.180583
66	1.181579
67	1.170939
68	1.153985
69	1.141044
70	1.145209
71	1.15777
72	1.158286
73	1.142032
74	1.145297
75	1.136755
76	1.115727
77	1.101783
78	1.086786
79	1.071085
80	1.068132
81	1.04434
82	1.030616
83	1.009544
84	1.001817
85	0.983949
86	0.966526
87	0.936428
88	0.910238
89	0.871517
90	0.837261
91	0.799421
92	0.760292
93	0.715408
94	0.718835
95	0.606865
96	0.49668
97	0.416466
98	0.310326
99	0.173544
100	0.065359