## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=KI4_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/KI4_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:19:40 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
400168796	400148100	8198088	239689158	97147892	21633276	33484020	0	125039	7581458	0.020488	0.599001	0.24278	0.054063	0.083679	0.841781	0.841737	0.016225	0.456163	0.372825	0.436465	0.898122			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.109355
1	0.198942
2	0.322491
3	0.417214
4	0.468121
5	0.542192
6	0.595512
7	0.65589
8	0.704189
9	0.750035
10	0.784746
11	0.815641
12	0.847164
13	0.869638
14	0.893074
15	0.924164
16	0.937138
17	0.944249
18	0.967561
19	0.986453
20	1.001364
21	1.020839
22	1.032524
23	1.043861
24	1.047278
25	1.05966
26	1.068572
27	1.075013
28	1.092579
29	1.109457
30	1.114983
31	1.129555
32	1.140751
33	1.138668
34	1.149831
35	1.158662
36	1.163125
37	1.177346
38	1.191951
39	1.204813
40	1.206843
41	1.205247
42	1.19959
43	1.2031
44	1.201796
45	1.209356
46	1.210682
47	1.209577
48	1.212238
49	1.207611
50	1.19086
51	1.1737
52	1.177403
53	1.193222
54	1.201217
55	1.198699
56	1.201685
57	1.208195
58	1.214058
59	1.213679
60	1.218146
61	1.214217
62	1.199778
63	1.202481
64	1.214655
65	1.202176
66	1.202531
67	1.20118
68	1.182165
69	1.168826
70	1.166722
71	1.174313
72	1.179605
73	1.167762
74	1.173763
75	1.171188
76	1.148478
77	1.13337
78	1.121506
79	1.11133
80	1.103156
81	1.088032
82	1.081871
83	1.066159
84	1.052006
85	1.034147
86	1.01743
87	0.989659
88	0.977101
89	0.939673
90	0.897065
91	0.846792
92	0.806416
93	0.766947
94	0.76872
95	0.654717
96	0.539939
97	0.458903
98	0.350716
99	0.198153
100	0.071199