## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=KI3_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/KI3_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:20:55 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
400720937	400700005	8226299	239822023	97209518	21767666	33679009	0	124176	7586802	0.02053	0.598508	0.242599	0.054324	0.08405	0.841107	0.841063	0.016104	0.45131	0.367371	0.437759	0.885778			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.11155
1	0.198087
2	0.3211
3	0.414594
4	0.467875
5	0.54461
6	0.596133
7	0.653697
8	0.706681
9	0.755887
10	0.789214
11	0.812868
12	0.837218
13	0.859821
14	0.886548
15	0.920206
16	0.928653
17	0.941489
18	0.962364
19	0.975694
20	0.981706
21	1.003854
22	1.025542
23	1.043001
24	1.053398
25	1.066414
26	1.076195
27	1.079614
28	1.096553
29	1.109193
30	1.113874
31	1.131007
32	1.13863
33	1.144969
34	1.161896
35	1.166617
36	1.169567
37	1.191753
38	1.209977
39	1.211876
40	1.207789
41	1.209458
42	1.20592
43	1.19917
44	1.195915
45	1.198928
46	1.20697
47	1.204289
48	1.201817
49	1.194864
50	1.1872
51	1.175483
52	1.168191
53	1.178546
54	1.198449
55	1.19749
56	1.195602
57	1.203325
58	1.21842
59	1.216517
60	1.22573
61	1.224614
62	1.211905
63	1.211381
64	1.214148
65	1.20069
66	1.202565
67	1.195064
68	1.188012
69	1.172271
70	1.160987
71	1.16795
72	1.177424
73	1.171429
74	1.177439
75	1.16439
76	1.14855
77	1.138031
78	1.126079
79	1.113945
80	1.103306
81	1.091549
82	1.083391
83	1.065019
84	1.044877
85	1.030975
86	1.016838
87	0.993106
88	0.976736
89	0.937943
90	0.898442
91	0.857046
92	0.821088
93	0.771139
94	0.76777
95	0.655238
96	0.54581
97	0.461641
98	0.351238
99	0.19485
100	0.072993