Left reads: Input : 5617647 Mapped : 5266786 (93.8% of input) of these: 496391 ( 9.4%) have multiple alignments (12292 have >20) Right reads: Input : 5617647 Mapped : 5025239 (89.5% of input) of these: 441189 ( 8.8%) have multiple alignments (12114 have >20) 91.6% overall read mapping rate. Aligned pairs: 4878144 of these: 425796 ( 8.7%) have multiple alignments 57372 ( 1.2%) are discordant alignments 85.8% concordant pair alignment rate.