## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=KI2_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/KI2_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:20:00 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
397889179	397868610	8159603	238253077	96571610	21586274	33302399	0	123428	7536844	0.020508	0.598824	0.242722	0.054255	0.083702	0.841546	0.841502	0.016113	0.45446	0.371246	0.448169	0.857143			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.108711
1	0.198292
2	0.323288
3	0.414128
4	0.462591
5	0.540572
6	0.599434
7	0.653919
8	0.695882
9	0.741799
10	0.788198
11	0.812134
12	0.840237
13	0.864027
14	0.888612
15	0.923334
16	0.936231
17	0.939994
18	0.96165
19	0.975925
20	0.987732
21	1.01156
22	1.031683
23	1.045313
24	1.05216
25	1.062074
26	1.064995
27	1.073925
28	1.093799
29	1.112138
30	1.113319
31	1.12479
32	1.132437
33	1.137859
34	1.154663
35	1.156516
36	1.162953
37	1.18457
38	1.193248
39	1.194962
40	1.203492
41	1.210296
42	1.207758
43	1.202035
44	1.19652
45	1.197481
46	1.215204
47	1.213837
48	1.203901
49	1.203155
50	1.189152
51	1.181028
52	1.173587
53	1.181144
54	1.196016
55	1.200073
56	1.199635
57	1.202759
58	1.206885
59	1.205781
60	1.215512
61	1.214801
62	1.20799
63	1.201461
64	1.213443
65	1.205323
66	1.204595
67	1.19991
68	1.178925
69	1.166115
70	1.163889
71	1.176576
72	1.183206
73	1.176737
74	1.179834
75	1.170831
76	1.156876
77	1.142113
78	1.134469
79	1.118414
80	1.102452
81	1.086097
82	1.085779
83	1.073311
84	1.060346
85	1.040892
86	1.016389
87	0.995203
88	0.982751
89	0.94177
90	0.89878
91	0.855366
92	0.81908
93	0.777038
94	0.772974
95	0.657901
96	0.54864
97	0.467965
98	0.350033
99	0.192872
100	0.069175