Left reads: Input : 5271135 Mapped : 4925318 (93.4% of input) of these: 420198 ( 8.5%) have multiple alignments (11788 have >20) Right reads: Input : 5271135 Mapped : 4703548 (89.2% of input) of these: 376734 ( 8.0%) have multiple alignments (11683 have >20) 91.3% overall read mapping rate. Aligned pairs: 4550694 of these: 361855 ( 8.0%) have multiple alignments 46421 ( 1.0%) are discordant alignments 85.5% concordant pair alignment rate.