## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=KI12_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/KI12_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:27:12 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
375666777	375650858	4563615	236587404	85554010	20576838	28371720	0	119514	7261768	0.012149	0.629807	0.227749	0.054776	0.075527	0.857555	0.857519	0.016191	0.458998	0.385187	0.39222	1.06108			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.114204
1	0.211703
2	0.347139
3	0.442634
4	0.502347
5	0.587194
6	0.647615
7	0.702598
8	0.754837
9	0.802673
10	0.840213
11	0.865889
12	0.886673
13	0.913817
14	0.933082
15	0.963152
16	0.979235
17	0.993296
18	1.012542
19	1.021088
20	1.028329
21	1.052006
22	1.070808
23	1.079385
24	1.085259
25	1.101838
26	1.109416
27	1.118261
28	1.136044
29	1.142976
30	1.142454
31	1.160691
32	1.166863
33	1.178677
34	1.187075
35	1.19027
36	1.192104
37	1.214697
38	1.22919
39	1.231635
40	1.234848
41	1.229628
42	1.224191
43	1.22654
44	1.216599
45	1.212677
46	1.218577
47	1.216909
48	1.217431
49	1.212908
50	1.19553
51	1.182028
52	1.187335
53	1.199116
54	1.210496
55	1.208273
56	1.202669
57	1.203317
58	1.199814
59	1.194482
60	1.2054
61	1.20598
62	1.192606
63	1.194537
64	1.199403
65	1.186388
66	1.189219
67	1.17806
68	1.16248
69	1.150341
70	1.154302
71	1.159879
72	1.151659
73	1.138022
74	1.137826
75	1.126325
76	1.11082
77	1.096594
78	1.081549
79	1.063065
80	1.050304
81	1.033368
82	1.022796
83	1.00228
84	0.988407
85	0.973499
86	0.956036
87	0.92874
88	0.91017
89	0.871376
90	0.831279
91	0.793981
92	0.746345
93	0.702338
94	0.704237
95	0.594432
96	0.489213
97	0.406542
98	0.298395
99	0.170729
100	0.065484