Left reads: Input : 5244943 Mapped : 4891205 (93.3% of input) of these: 417403 ( 8.5%) have multiple alignments (11757 have >20) Right reads: Input : 5244943 Mapped : 4717036 (89.9% of input) of these: 377467 ( 8.0%) have multiple alignments (11672 have >20) 91.6% overall read mapping rate. Aligned pairs: 4555790 of these: 361509 ( 7.9%) have multiple alignments 45615 ( 1.0%) are discordant alignments 86.0% concordant pair alignment rate.