Left reads: Input : 5224749 Mapped : 4897437 (93.7% of input) of these: 416770 ( 8.5%) have multiple alignments (12054 have >20) Right reads: Input : 5224749 Mapped : 4672533 (89.4% of input) of these: 372283 ( 8.0%) have multiple alignments (11946 have >20) 91.6% overall read mapping rate. Aligned pairs: 4537891 of these: 358932 ( 7.9%) have multiple alignments 46380 ( 1.0%) are discordant alignments 86.0% concordant pair alignment rate.