## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=KI1_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/KI1_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:22:38 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
393820636	393799994	8119817	235172477	95754384	21439758	33317923	0	122759	7448218	0.020619	0.597188	0.243155	0.054443	0.084606	0.840342	0.840298	0.016214	0.457527	0.362715	0.430347	0.864606			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.110747
1	0.199716
2	0.324489
3	0.417927
4	0.462095
5	0.533848
6	0.591755
7	0.650792
8	0.70404
9	0.748396
10	0.783678
11	0.809967
12	0.833571
13	0.859828
14	0.88686
15	0.918051
16	0.93304
17	0.942531
18	0.966339
19	0.981055
20	0.994005
21	1.011633
22	1.023576
23	1.032999
24	1.038848
25	1.061418
26	1.069679
27	1.072498
28	1.087114
29	1.103287
30	1.105768
31	1.123171
32	1.131539
33	1.141444
34	1.16312
35	1.17445
36	1.169434
37	1.186955
38	1.19139
39	1.203965
40	1.212885
41	1.221846
42	1.213057
43	1.201916
44	1.198748
45	1.202974
46	1.216838
47	1.214521
48	1.207058
49	1.204344
50	1.195327
51	1.177286
52	1.178055
53	1.186012
54	1.196733
55	1.195838
56	1.20096
57	1.20583
58	1.21441
59	1.213019
60	1.221107
61	1.212842
62	1.205983
63	1.208228
64	1.215119
65	1.20557
66	1.205252
67	1.192454
68	1.173601
69	1.166383
70	1.163617
71	1.174948
72	1.182539
73	1.174365
74	1.168625
75	1.157269
76	1.149564
77	1.144468
78	1.133847
79	1.115799
80	1.105632
81	1.091306
82	1.088895
83	1.064597
84	1.048556
85	1.038662
86	1.020689
87	0.991545
88	0.974633
89	0.93772
90	0.903615
91	0.858525
92	0.817682
93	0.771694
94	0.772527
95	0.660754
96	0.549353
97	0.465391
98	0.353852
99	0.195556
100	0.070049