## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=WT2_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/WT2_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Mon Apr 29 09:58:32 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
3564191151	3563974507	59898378	2081625053	1075523901	50828496	296127672	0	147191	59789620	0.016807	0.584074	0.301777	0.014262	0.083089	0.885851	0.885797	0.002456	0.593853	0.185261	0.603299	0.338022			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.070377
1	0.113747
2	0.182064
3	0.240454
4	0.272271
5	0.325475
6	0.37725
7	0.420257
8	0.461344
9	0.498637
10	0.536474
11	0.567441
12	0.591317
13	0.61164
14	0.636124
15	0.66232
16	0.686768
17	0.709623
18	0.723694
19	0.742544
20	0.762438
21	0.782371
22	0.804035
23	0.813608
24	0.823318
25	0.841396
26	0.857517
27	0.867871
28	0.886375
29	0.898477
30	0.914976
31	0.934911
32	0.943866
33	0.950882
34	0.963983
35	0.979971
36	0.992179
37	1.016841
38	1.040934
39	1.050888
40	1.054066
41	1.066927
42	1.0732
43	1.070991
44	1.073342
45	1.085291
46	1.095622
47	1.100763
48	1.111146
49	1.120748
50	1.126052
51	1.131816
52	1.129088
53	1.140718
54	1.16328
55	1.183601
56	1.185461
57	1.190778
58	1.210376
59	1.238692
60	1.264586
61	1.267735
62	1.261361
63	1.275608
64	1.29667
65	1.296922
66	1.294304
67	1.303497
68	1.305934
69	1.309738
70	1.319742
71	1.336894
72	1.349511
73	1.369216
74	1.361906
75	1.365119
76	1.349539
77	1.35802
78	1.364878
79	1.397653
80	1.401232
81	1.408158
82	1.417387
83	1.419343
84	1.435702
85	1.447145
86	1.452486
87	1.433525
88	1.409169
89	1.360823
90	1.320832
91	1.271047
92	1.22575
93	1.175568
94	1.087381
95	0.969168
96	0.835119
97	0.680103
98	0.48888
99	0.266265
100	0.096078