## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=WT1_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/WT1_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Mon Apr 29 09:59:06 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
4548907923	4548675301	38619852	2756314953	1285762725	76208291	391785936	0	163296	76532848	0.00849	0.60596	0.282668	0.016754	0.086132	0.888627	0.888582	0.002129	0.544255	0.221931	0.531815	0.457642			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.076527
1	0.128546
2	0.206421
3	0.272003
4	0.30812
5	0.365317
6	0.422691
7	0.47463
8	0.524336
9	0.564517
10	0.603868
11	0.639862
12	0.665265
13	0.681487
14	0.697994
15	0.722823
16	0.752428
17	0.777459
18	0.792748
19	0.817738
20	0.845744
21	0.864108
22	0.878765
23	0.891581
24	0.901473
25	0.912597
26	0.927096
27	0.936939
28	0.957756
29	0.972637
30	0.990666
31	1.010618
32	1.021271
33	1.026846
34	1.044918
35	1.06074
36	1.070288
37	1.09289
38	1.111938
39	1.119547
40	1.117714
41	1.124982
42	1.12822
43	1.128984
44	1.128685
45	1.139324
46	1.150465
47	1.154088
48	1.15863
49	1.162719
50	1.163041
51	1.163114
52	1.155548
53	1.167627
54	1.182894
55	1.196263
56	1.195063
57	1.20099
58	1.220103
59	1.242517
60	1.26398
61	1.270362
62	1.25825
63	1.261301
64	1.272457
65	1.264889
66	1.273783
67	1.281278
68	1.283341
69	1.289861
70	1.291176
71	1.292734
72	1.304461
73	1.314367
74	1.299011
75	1.296507
76	1.284714
77	1.286063
78	1.28372
79	1.299858
80	1.304147
81	1.31368
82	1.311264
83	1.302314
84	1.311496
85	1.307961
86	1.296355
87	1.280072
88	1.260954
89	1.210503
90	1.163012
91	1.113413
92	1.068885
93	1.016296
94	0.932673
95	0.834256
96	0.720722
97	0.584471
98	0.421998
99	0.22825
100	0.084241