## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=PB2_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/PB2_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Mon Apr 29 09:59:03 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
4353284112	4353058524	47009862	2644821354	1228973702	70885820	361386518	0	172142	73563366	0.010799	0.607578	0.282324	0.016284	0.083019	0.889902	0.889856	0.002335	0.490237	0.279225	0.451215	0.671206			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.084437
1	0.153247
2	0.256263
3	0.350925
4	0.411162
5	0.489297
6	0.560288
7	0.616382
8	0.662141
9	0.702125
10	0.739976
11	0.776246
12	0.806658
13	0.82994
14	0.855466
15	0.882163
16	0.906706
17	0.921387
18	0.9282
19	0.949549
20	0.968225
21	0.983047
22	1.004464
23	1.015905
24	1.026613
25	1.039073
26	1.049358
27	1.057844
28	1.079448
29	1.08689
30	1.094628
31	1.114635
32	1.122716
33	1.132336
34	1.147882
35	1.157025
36	1.153673
37	1.163265
38	1.178525
39	1.1746
40	1.167916
41	1.168061
42	1.169269
43	1.167715
44	1.161325
45	1.162322
46	1.16376
47	1.164697
48	1.168804
49	1.167004
50	1.165856
51	1.1607
52	1.150333
53	1.157719
54	1.166844
55	1.174929
56	1.175669
57	1.177438
58	1.186711
59	1.205546
60	1.224606
61	1.221952
62	1.210226
63	1.210229
64	1.212633
65	1.202914
66	1.203484
67	1.208475
68	1.202197
69	1.205722
70	1.208362
71	1.209599
72	1.21105
73	1.21688
74	1.195756
75	1.192268
76	1.174615
77	1.177023
78	1.170928
79	1.182412
80	1.164068
81	1.147955
82	1.13842
83	1.133401
84	1.13599
85	1.136674
86	1.141905
87	1.120303
88	1.094154
89	1.044385
90	0.999444
91	0.950754
92	0.900811
93	0.844668
94	0.773736
95	0.690484
96	0.596311
97	0.479124
98	0.339651
99	0.189051
100	0.077736