## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=PB1_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/PB1_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Mon Apr 29 09:58:51 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
3967251444	3967013942	87464694	2369723435	1105232728	71575847	333057758	0	176063	65955529	0.022048	0.597357	0.278606	0.018043	0.083957	0.875963	0.87591	0.002662	0.482665	0.283088	0.473528	0.674062			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.086444
1	0.156661
2	0.259498
3	0.348373
4	0.404741
5	0.484042
6	0.55453
7	0.61106
8	0.655975
9	0.697302
10	0.735135
11	0.775094
12	0.808146
13	0.834379
14	0.856378
15	0.877331
16	0.902226
17	0.918365
18	0.922981
19	0.940758
20	0.9557
21	0.968693
22	0.992293
23	1.009153
24	1.014005
25	1.017394
26	1.030939
27	1.041934
28	1.060099
29	1.06896
30	1.080475
31	1.096877
32	1.106357
33	1.112221
34	1.12049
35	1.126156
36	1.130284
37	1.151899
38	1.167617
39	1.166771
40	1.162558
41	1.164522
42	1.158635
43	1.157365
44	1.156322
45	1.156699
46	1.160804
47	1.161579
48	1.164565
49	1.162953
50	1.161422
51	1.159493
52	1.153924
53	1.160478
54	1.170441
55	1.179803
56	1.180392
57	1.188536
58	1.197563
59	1.213243
60	1.230574
61	1.229924
62	1.218774
63	1.219862
64	1.227169
65	1.216301
66	1.215751
67	1.220927
68	1.217894
69	1.222822
70	1.22598
71	1.222078
72	1.213847
73	1.220059
74	1.203296
75	1.203149
76	1.186666
77	1.189079
78	1.184039
79	1.199292
80	1.181907
81	1.164922
82	1.157091
83	1.150145
84	1.149954
85	1.148215
86	1.148408
87	1.119341
88	1.09431
89	1.048948
90	1.009256
91	0.96005
92	0.914297
93	0.859047
94	0.782861
95	0.69563
96	0.598114
97	0.480765
98	0.339663
99	0.18853
100	0.077854