-----------------------
Start of variable list:
-----------------------
Sample_ID:
2wk_PBS2
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE122243_asparaginase
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE122243_asparaginase/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Tue May  7 20:44:20 EDT 2019
Running on node : scc-ka2
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE122243_asparaginase/Scripts/03_Read_Length
Current job ID : 5983629
Current job name : Step_03_2wk_PBS2
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/5983629.1.linga

Loading required modules...


List files in scratch directory:

total 1.7G
drwx------   2 kkarri waxmanlab 4.0K May  7 20:44 .
drwxrwxrwt. 61 root   root      116K May  7 20:44 ..
-rw-r--r--   1 kkarri waxmanlab 1.7G May  7 20:48 SRR8168075.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR8168075.fastq


Ending Read Length


List files in scratch

total 7.6G
drwx------   2 kkarri waxmanlab 4.0K May  7 20:50 .
drwxrwxrwt. 60 root   root      116K May  7 20:50 ..
-rw-r--r--   1 kkarri waxmanlab 7.6G May  7 20:48 SRR8168075.fastq
==========================================================
Finished on : Tue May  7 20:51:01 EDT 2019
0 hours, 6 minutes and 41 seconds elapsed.
==========================================================