-----------------------
Start of variable list:
-----------------------
Sample_ID:
16wk_PBS3
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE122243_asparaginase
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE122243_asparaginase/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Tue May  7 20:44:40 EDT 2019
Running on node : scc-kb1
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE122243_asparaginase/Scripts/03_Read_Length
Current job ID : 5983639
Current job name : Step_03_16wk_PBS3
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/5983639.1.linga

Loading required modules...


List files in scratch directory:

total 1.6G
drwx------   2 kkarri waxmanlab 4.0K May  7 20:44 .
drwxrwxrwt. 44 root   root      180K May  7 20:44 ..
-rw-r--r--   1 kkarri waxmanlab 1.6G May  7 20:46 SRR8168085.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR8168085.fastq


Ending Read Length


List files in scratch

total 7.2G
drwx------   2 kkarri waxmanlab 4.0K May  7 20:47 .
drwxrwxrwt. 43 root   root      180K May  7 20:47 ..
-rw-r--r--   1 kkarri waxmanlab 7.2G May  7 20:46 SRR8168085.fastq
==========================================================
Finished on : Tue May  7 20:48:32 EDT 2019
0 hours, 3 minutes and 52 seconds elapsed.
==========================================================