-----------------------
Start of variable list:
-----------------------
Sample_ID:
16wk_PBS2
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE122243_asparaginase
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE122243_asparaginase/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Tue May  7 20:44:40 EDT 2019
Running on node : scc-kb1
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE122243_asparaginase/Scripts/03_Read_Length
Current job ID : 5983638
Current job name : Step_03_16wk_PBS2
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/5983638.1.linga

Loading required modules...


List files in scratch directory:

total 1.8G
drwx------   2 kkarri waxmanlab 4.0K May  7 20:44 .
drwxrwxrwt. 44 root   root      180K May  7 20:44 ..
-rw-r--r--   1 kkarri waxmanlab 1.8G May  7 20:44 SRR8168084.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR8168084.fastq


Ending Read Length


List files in scratch

total 7.9G
drwx------   2 kkarri waxmanlab 4.0K May  7 20:46 .
drwxrwxrwt. 44 root   root      180K May  7 20:44 ..
-rw-r--r--   1 kkarri waxmanlab 7.9G May  7 20:44 SRR8168084.fastq
==========================================================
Finished on : Tue May  7 20:47:31 EDT 2019
0 hours, 2 minutes and 52 seconds elapsed.
==========================================================