Left reads: Input : 16480172 Mapped : 15592831 (94.6% of input) of these: 2068793 (13.3%) have multiple alignments (93453 have >20) Right reads: Input : 16480172 Mapped : 13116475 (79.6% of input) of these: 1702243 (13.0%) have multiple alignments (92540 have >20) 87.1% overall read mapping rate. Aligned pairs: 12843146 of these: 1657439 (12.9%) have multiple alignments 315355 ( 2.5%) are discordant alignments 76.0% concordant pair alignment rate.