## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=Con_WT4_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/Con_WT4_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Apr 26 13:21:19 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
886470363	886448086	5558623	636377067	194501201	20521978	29492963	0	107432	22674330	0.006271	0.717895	0.219416	0.023151	0.033271	0.937312	0.937288	0.004716	0.474037	0.529154	0.354087	1.396526			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.161805
1	0.303648
2	0.45746
3	0.551514
4	0.612541
5	0.700793
6	0.755721
7	0.804678
8	0.865611
9	0.896056
10	0.916985
11	0.93615
12	0.95403
13	0.975698
14	0.995107
15	1.024598
16	1.037114
17	1.046631
18	1.054769
19	1.059309
20	1.070652
21	1.0847
22	1.096042
23	1.10515
24	1.103795
25	1.120797
26	1.141759
27	1.142215
28	1.145093
29	1.157512
30	1.167607
31	1.179865
32	1.178348
33	1.173988
34	1.166111
35	1.176416
36	1.180148
37	1.183689
38	1.183099
39	1.184786
40	1.194293
41	1.210685
42	1.216191
43	1.216535
44	1.223251
45	1.221267
46	1.219541
47	1.212951
48	1.210328
49	1.210942
50	1.207989
51	1.201196
52	1.19598
53	1.193244
54	1.189487
55	1.194382
56	1.188947
57	1.187277
58	1.183217
59	1.170985
60	1.180249
61	1.188909
62	1.16873
63	1.165964
64	1.171623
65	1.164315
66	1.145189
67	1.129612
68	1.112495
69	1.099059
70	1.101802
71	1.121469
72	1.130017
73	1.111112
74	1.098339
75	1.068736
76	1.05502
77	1.048261
78	1.046424
79	1.043371
80	1.021489
81	1.013231
82	0.999215
83	0.983712
84	0.964418
85	0.946452
86	0.92422
87	0.896515
88	0.86433
89	0.822548
90	0.776281
91	0.733559
92	0.685847
93	0.633245
94	0.590364
95	0.525011
96	0.46073
97	0.385823
98	0.283649
99	0.158428
100	0.057451