Left reads: Input : 15728253 Mapped : 14181017 (90.2% of input) of these: 1183874 ( 8.3%) have multiple alignments (31006 have >20) Right reads: Input : 15728253 Mapped : 13110903 (83.4% of input) of these: 1068367 ( 8.1%) have multiple alignments (30662 have >20) 86.8% overall read mapping rate. Aligned pairs: 12811498 of these: 1029644 ( 8.0%) have multiple alignments 344305 ( 2.7%) are discordant alignments 79.3% concordant pair alignment rate.