## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=Con_WT3_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/Con_WT3_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Apr 26 13:24:21 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
890107644	890073698	20254366	635599645	190648317	16332329	27251608	0	121345	22513822	0.022756	0.714098	0.214194	0.018349	0.030617	0.928292	0.928256	0.005361	0.472581	0.536852	0.342474	1.487499			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.163792
1	0.31199
2	0.473626
3	0.567705
4	0.637916
5	0.71734
6	0.769802
7	0.812292
8	0.866551
9	0.896817
10	0.916713
11	0.934213
12	0.957643
13	0.970667
14	0.984955
15	1.004765
16	1.013606
17	1.020729
18	1.032932
19	1.047235
20	1.058883
21	1.070893
22	1.088382
23	1.102467
24	1.099126
25	1.111341
26	1.12058
27	1.121739
28	1.133073
29	1.145396
30	1.160075
31	1.172666
32	1.178935
33	1.177444
34	1.168372
35	1.174057
36	1.182727
37	1.193081
38	1.196965
39	1.202577
40	1.212341
41	1.224773
42	1.223655
43	1.225563
44	1.232322
45	1.233527
46	1.234731
47	1.224634
48	1.215252
49	1.21379
50	1.211206
51	1.201791
52	1.192754
53	1.196175
54	1.197401
55	1.198577
56	1.201239
57	1.20155
58	1.201054
59	1.190964
60	1.189129
61	1.195164
62	1.181128
63	1.176343
64	1.177961
65	1.163916
66	1.149779
67	1.140315
68	1.11733
69	1.10573
70	1.116225
71	1.117967
72	1.115669
73	1.099246
74	1.087107
75	1.06434
76	1.050515
77	1.041763
78	1.049374
79	1.051479
80	1.017545
81	1.008236
82	0.998164
83	0.978145
84	0.952674
85	0.933055
86	0.924822
87	0.898929
88	0.862007
89	0.808565
90	0.768707
91	0.730906
92	0.679556
93	0.632122
94	0.586178
95	0.517099
96	0.449105
97	0.373462
98	0.272562
99	0.148951
100	0.052221