Left reads: Input : 16565333 Mapped : 15218333 (91.9% of input) of these: 1136408 ( 7.5%) have multiple alignments (31977 have >20) Right reads: Input : 16565333 Mapped : 13510275 (81.6% of input) of these: 969696 ( 7.2%) have multiple alignments (31398 have >20) 86.7% overall read mapping rate. Aligned pairs: 13269749 of these: 945134 ( 7.1%) have multiple alignments 260145 ( 2.0%) are discordant alignments 78.5% concordant pair alignment rate.