## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=Con_WT1_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/Con_WT1_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Apr 26 13:24:21 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
946256429	946239445	1982034	684109964	206550184	22629381	30969022	0	131089	24271802	0.002095	0.722978	0.218285	0.023915	0.032729	0.941263	0.941246	0.005372	0.450946	0.560928	0.356281	1.482612			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.162299
1	0.31692
2	0.485148
3	0.57926
4	0.644429
5	0.730337
6	0.789761
7	0.837623
8	0.890394
9	0.927143
10	0.957163
11	0.972248
12	0.986166
13	1.003829
14	1.01346
15	1.041428
16	1.053972
17	1.064308
18	1.079622
19	1.089787
20	1.098392
21	1.107841
22	1.124341
23	1.137776
24	1.136715
25	1.147499
26	1.159176
27	1.157291
28	1.166366
29	1.177832
30	1.190001
31	1.199084
32	1.202739
33	1.202381
34	1.198065
35	1.207643
36	1.211937
37	1.21601
38	1.218836
39	1.22276
40	1.232271
41	1.241665
42	1.243206
43	1.239912
44	1.238441
45	1.237402
46	1.239118
47	1.227279
48	1.210742
49	1.212956
50	1.209687
51	1.197022
52	1.187664
53	1.191398
54	1.190076
55	1.18912
56	1.18066
57	1.184896
58	1.181637
59	1.162141
60	1.159783
61	1.166768
62	1.159946
63	1.158806
64	1.163322
65	1.149608
66	1.129803
67	1.115267
68	1.097389
69	1.08567
70	1.08436
71	1.094343
72	1.105139
73	1.080357
74	1.071876
75	1.044057
76	1.025462
77	1.02233
78	1.010527
79	0.991281
80	0.972115
81	0.97112
82	0.957376
83	0.93982
84	0.91562
85	0.898092
86	0.875075
87	0.847671
88	0.812457
89	0.769668
90	0.730536
91	0.690631
92	0.644242
93	0.600578
94	0.557243
95	0.495048
96	0.437433
97	0.366209
98	0.270244
99	0.149633
100	0.054765