## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=72h_Act4_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/72h_Act4_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Apr 26 13:22:32 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
1065461541	1065436741	9216753	773534961	229789873	19965422	32934952	0	97389	27406550	0.008651	0.726026	0.215677	0.018739	0.030912	0.941703	0.941681	0.003541	0.462413	0.496746	0.344796	1.352244			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.148316
1	0.281343
2	0.433611
3	0.518515
4	0.580234
5	0.657192
6	0.710285
7	0.757323
8	0.81441
9	0.851753
10	0.886272
11	0.902598
12	0.924847
13	0.947619
14	0.967798
15	0.996627
16	1.004818
17	1.015198
18	1.028817
19	1.044407
20	1.055441
21	1.069317
22	1.088229
23	1.100383
24	1.101752
25	1.117659
26	1.12823
27	1.134039
28	1.143081
29	1.147446
30	1.155187
31	1.175213
32	1.182761
33	1.18747
34	1.190432
35	1.201493
36	1.204527
37	1.215292
38	1.223139
39	1.228383
40	1.235754
41	1.241312
42	1.245918
43	1.244758
44	1.248292
45	1.245598
46	1.25292
47	1.247909
48	1.239695
49	1.232702
50	1.221085
51	1.208414
52	1.205202
53	1.206293
54	1.213371
55	1.221623
56	1.224774
57	1.221168
58	1.213673
59	1.205417
60	1.206125
61	1.212222
62	1.199917
63	1.199969
64	1.203569
65	1.190179
66	1.170978
67	1.157261
68	1.134988
69	1.121359
70	1.124818
71	1.130046
72	1.121822
73	1.110789
74	1.103201
75	1.078191
76	1.063724
77	1.054702
78	1.048784
79	1.046311
80	1.019987
81	1.009661
82	0.997351
83	0.9785
84	0.953189
85	0.932058
86	0.906606
87	0.869832
88	0.834474
89	0.790251
90	0.748118
91	0.71638
92	0.66868
93	0.619389
94	0.569069
95	0.501099
96	0.440935
97	0.368987
98	0.270084
99	0.147224
100	0.052796