Left reads: Input : 12996465 Mapped : 12178124 (93.7% of input) of these: 1186094 ( 9.7%) have multiple alignments (39390 have >20) Right reads: Input : 12996465 Mapped : 10515232 (80.9% of input) of these: 986900 ( 9.4%) have multiple alignments (38857 have >20) 87.3% overall read mapping rate. Aligned pairs: 10278553 of these: 954109 ( 9.3%) have multiple alignments 296286 ( 2.9%) are discordant alignments 76.8% concordant pair alignment rate.