## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=24h_Act4_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/24h_Act4_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Apr 26 13:27:25 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
1335681442	1335650073	13133687	979716635	268930310	34405394	39471499	0	174840	34014401	0.009833	0.733513	0.201348	0.025759	0.029552	0.934861	0.934839	0.005114	0.4598	0.550548	0.32436	1.645743			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.168754
1	0.324198
2	0.48936
3	0.586645
4	0.651195
5	0.72738
6	0.775918
7	0.826205
8	0.890359
9	0.930293
10	0.958719
11	0.975251
12	0.997597
13	1.023465
14	1.041593
15	1.070811
16	1.077463
17	1.084494
18	1.09505
19	1.106984
20	1.12074
21	1.133265
22	1.143014
23	1.153143
24	1.154993
25	1.170666
26	1.18081
27	1.179881
28	1.186787
29	1.19771
30	1.204025
31	1.214747
32	1.213042
33	1.208268
34	1.206711
35	1.216469
36	1.21911
37	1.222785
38	1.224277
39	1.227611
40	1.233935
41	1.240948
42	1.246844
43	1.247115
44	1.248893
45	1.24245
46	1.244475
47	1.2347
48	1.22588
49	1.226344
50	1.222226
51	1.214431
52	1.198022
53	1.198906
54	1.201463
55	1.196513
56	1.192277
57	1.184394
58	1.175492
59	1.165839
60	1.162337
61	1.166377
62	1.157554
63	1.154462
64	1.158121
65	1.135085
66	1.116359
67	1.11041
68	1.089106
69	1.076794
70	1.081266
71	1.08303
72	1.089623
73	1.084368
74	1.078273
75	1.040956
76	1.018938
77	1.009821
78	1.007288
79	1.006265
80	0.969261
81	0.948908
82	0.932791
83	0.911701
84	0.891957
85	0.876304
86	0.86223
87	0.83395
88	0.792481
89	0.746351
90	0.705297
91	0.660744
92	0.606432
93	0.56229
94	0.518138
95	0.458051
96	0.398933
97	0.328383
98	0.24225
99	0.135903
100	0.047942