## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=12h_Act3_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/12h_Act3_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Apr 26 13:23:50 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
1324760204	1324729234	10356493	965783314	268554142	38025497	42015806	0	158511	33799932	0.007818	0.729042	0.202724	0.028704	0.031717	0.931766	0.931744	0.004668	0.461835	0.547205	0.320276	1.540918			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.163729
1	0.327465
2	0.492325
3	0.585848
4	0.661503
5	0.742732
6	0.794843
7	0.847249
8	0.903597
9	0.940449
10	0.96599
11	0.990747
12	1.014181
13	1.036159
14	1.053091
15	1.071071
16	1.081981
17	1.089862
18	1.092062
19	1.109253
20	1.116193
21	1.128268
22	1.141747
23	1.157115
24	1.158176
25	1.17094
26	1.179995
27	1.177146
28	1.18087
29	1.184095
30	1.197099
31	1.205269
32	1.205824
33	1.208661
34	1.204982
35	1.212663
36	1.223749
37	1.226567
38	1.223672
39	1.227748
40	1.229133
41	1.23842
42	1.244232
43	1.246665
44	1.251866
45	1.244088
46	1.242727
47	1.235076
48	1.220431
49	1.217456
50	1.208922
51	1.192072
52	1.181715
53	1.185562
54	1.185849
55	1.182191
56	1.184174
57	1.18596
58	1.180103
59	1.163732
60	1.154325
61	1.16472
62	1.160492
63	1.15441
64	1.161737
65	1.141746
66	1.128474
67	1.115171
68	1.090693
69	1.079718
70	1.076577
71	1.071776
72	1.065254
73	1.058109
74	1.052832
75	1.031085
76	1.018331
77	1.01088
78	1.007588
79	1.006945
80	0.971413
81	0.953266
82	0.939988
83	0.913956
84	0.890692
85	0.87075
86	0.851568
87	0.825009
88	0.790078
89	0.753436
90	0.711954
91	0.671563
92	0.622427
93	0.580574
94	0.532406
95	0.465362
96	0.406461
97	0.33552
98	0.244362
99	0.133403
100	0.046583