## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=48h_Act2_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/48h_Act2_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Apr 26 13:22:50 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
1120324777	1120303332	8837707	824837567	224486828	30745207	31400481	0	114010	28581194	0.007889	0.736263	0.20038	0.027444	0.028029	0.936643	0.936625	0.003973	0.459429	0.582197	0.323687	1.707563			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.176741
1	0.339775
2	0.510694
3	0.599764
4	0.659241
5	0.737483
6	0.786783
7	0.838826
8	0.906112
9	0.945107
10	0.970457
11	0.990046
12	1.015085
13	1.031478
14	1.047216
15	1.080738
16	1.091263
17	1.096755
18	1.094219
19	1.103148
20	1.111804
21	1.126978
22	1.136638
23	1.143205
24	1.150432
25	1.166184
26	1.171997
27	1.166289
28	1.174228
29	1.186596
30	1.197118
31	1.204232
32	1.204248
33	1.19813
34	1.196551
35	1.209669
36	1.225405
37	1.232982
38	1.227546
39	1.23471
40	1.246219
41	1.254974
42	1.258342
43	1.255135
44	1.250924
45	1.248502
46	1.250062
47	1.241142
48	1.234022
49	1.230009
50	1.22557
51	1.205633
52	1.190127
53	1.188258
54	1.188722
55	1.190844
56	1.190104
57	1.186393
58	1.184008
59	1.17477
60	1.173009
61	1.179407
62	1.166946
63	1.163196
64	1.160403
65	1.13947
66	1.118179
67	1.104334
68	1.088274
69	1.075199
70	1.069392
71	1.067713
72	1.076003
73	1.065059
74	1.064737
75	1.033007
76	1.009631
77	1.006765
78	0.994412
79	0.970161
80	0.955171
81	0.948198
82	0.931686
83	0.911316
84	0.887671
85	0.869029
86	0.845322
87	0.81921
88	0.786755
89	0.734571
90	0.695354
91	0.657936
92	0.609859
93	0.567335
94	0.522444
95	0.460948
96	0.399667
97	0.336659
98	0.250047
99	0.138827
100	0.049286