## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=36h_Act2_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/36h_Act2_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Apr 26 13:23:52 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
1410056593	1410019065	16964387	1022508168	293094524	33636334	43824816	0	153484	35829042	0.012031	0.725173	0.207866	0.023855	0.031081	0.933039	0.933014	0.004266	0.463866	0.558163	0.34492	1.505228			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.168311
1	0.313728
2	0.478312
3	0.570092
4	0.632698
5	0.704632
6	0.754061
7	0.802632
8	0.859627
9	0.895855
10	0.921721
11	0.944525
12	0.964305
13	0.981918
14	0.997158
15	1.019674
16	1.039662
17	1.048797
18	1.05573
19	1.067824
20	1.075894
21	1.090699
22	1.105532
23	1.116897
24	1.118733
25	1.132855
26	1.148366
27	1.147711
28	1.151783
29	1.160265
30	1.169355
31	1.178403
32	1.185429
33	1.191244
34	1.186616
35	1.199477
36	1.2086
37	1.212021
38	1.21132
39	1.213874
40	1.222774
41	1.230768
42	1.231379
43	1.232105
44	1.23726
45	1.236607
46	1.237927
47	1.228684
48	1.216584
49	1.213184
50	1.206858
51	1.202565
52	1.196705
53	1.200142
54	1.198641
55	1.202104
56	1.20135
57	1.202728
58	1.199985
59	1.186237
60	1.186658
61	1.197441
62	1.187594
63	1.184922
64	1.183175
65	1.168086
66	1.150256
67	1.138625
68	1.117507
69	1.106356
70	1.108263
71	1.104365
72	1.092944
73	1.083575
74	1.075
75	1.05221
76	1.039411
77	1.036659
78	1.037887
79	1.039236
80	1.010216
81	0.997764
82	0.979048
83	0.95396
84	0.931171
85	0.910183
86	0.890246
87	0.86027
88	0.828594
89	0.787279
90	0.742871
91	0.704426
92	0.657858
93	0.612704
94	0.569052
95	0.498634
96	0.435632
97	0.360315
98	0.262302
99	0.14278
100	0.048584