## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=24h_Act2_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/24h_Act2_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Apr 26 13:22:50 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
1323980620	1323954572	7548164	965469251	279509903	34320253	37111378	0	215793	33833835	0.005701	0.729231	0.211117	0.025923	0.028031	0.940349	0.94033	0.006338	0.459637	0.531949	0.359785	1.414146			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.162211
1	0.306339
2	0.464884
3	0.560651
4	0.620318
5	0.692079
6	0.739326
7	0.790902
8	0.845968
9	0.884613
10	0.913145
11	0.931214
12	0.952547
13	0.967739
14	0.98852
15	1.011764
16	1.025209
17	1.037098
18	1.050185
19	1.066734
20	1.075014
21	1.085165
22	1.094698
23	1.104597
24	1.110166
25	1.124674
26	1.133633
27	1.132033
28	1.137156
29	1.143156
30	1.1514
31	1.166041
32	1.16969
33	1.172305
34	1.174432
35	1.18724
36	1.195498
37	1.206259
38	1.200106
39	1.201817
40	1.207067
41	1.219744
42	1.231618
43	1.237126
44	1.239376
45	1.233065
46	1.235258
47	1.231775
48	1.222498
49	1.221136
50	1.211044
51	1.19969
52	1.19167
53	1.200836
54	1.199547
55	1.199626
56	1.196212
57	1.19041
58	1.189242
59	1.182344
60	1.182872
61	1.190668
62	1.183151
63	1.179128
64	1.183449
65	1.171288
66	1.156391
67	1.14479
68	1.122893
69	1.108068
70	1.106993
71	1.110039
72	1.100036
73	1.096164
74	1.097668
75	1.075312
76	1.06523
77	1.061699
78	1.047603
79	1.034844
80	1.015603
81	1.006951
82	0.995307
83	0.973432
84	0.954591
85	0.93278
86	0.911727
87	0.884044
88	0.852926
89	0.810203
90	0.771426
91	0.732978
92	0.679497
93	0.632521
94	0.586487
95	0.520842
96	0.450554
97	0.368255
98	0.267032
99	0.147108
100	0.049641