## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=12h_Act2_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/12h_Act2_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Apr 26 13:24:26 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
1228217652	1228186857	12793080	882323321	258901324	32849721	41327219	0	131031	31236755	0.010416	0.718395	0.2108	0.026747	0.033649	0.929195	0.929171	0.004177	0.470771	0.516331	0.334532	1.431575			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.14868
1	0.293769
2	0.457212
3	0.549862
4	0.609316
5	0.686387
6	0.739539
7	0.786486
8	0.850709
9	0.891031
10	0.914652
11	0.94047
12	0.964316
13	0.986177
14	1.007604
15	1.031458
16	1.043537
17	1.054296
18	1.063916
19	1.07896
20	1.092413
21	1.108048
22	1.118092
23	1.13172
24	1.138325
25	1.153678
26	1.155879
27	1.15849
28	1.166321
29	1.175606
30	1.19446
31	1.204877
32	1.204617
33	1.202727
34	1.203593
35	1.215706
36	1.220687
37	1.23214
38	1.228756
39	1.230573
40	1.233846
41	1.243208
42	1.2443
43	1.240666
44	1.242911
45	1.23453
46	1.239673
47	1.235135
48	1.219609
49	1.223313
50	1.223922
51	1.209356
52	1.199384
53	1.203385
54	1.208546
55	1.210325
56	1.211684
57	1.211118
58	1.201434
59	1.183425
60	1.178215
61	1.184957
62	1.179266
63	1.167338
64	1.165977
65	1.148793
66	1.13949
67	1.128663
68	1.108327
69	1.097251
70	1.092328
71	1.09096
72	1.09839
73	1.088208
74	1.080136
75	1.057001
76	1.045841
77	1.035828
78	1.022776
79	1.025084
80	0.996854
81	0.990876
82	0.973887
83	0.954206
84	0.929398
85	0.900467
86	0.88539
87	0.863592
88	0.824987
89	0.776773
90	0.728636
91	0.684776
92	0.630237
93	0.589974
94	0.548077
95	0.484076
96	0.421888
97	0.352688
98	0.254865
99	0.140038
100	0.048831