## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=48h_Act1_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/48h_Act1_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Apr 26 13:21:22 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
1306830250	1306798734	12069063	972996607	265250823	21696328	34793348	0	201106	33681994	0.009236	0.744565	0.202978	0.016603	0.026625	0.947543	0.94752	0.005935	0.474241	0.593328	0.300035	1.825792			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.176172
1	0.329664
2	0.504216
3	0.608128
4	0.679333
5	0.767536
6	0.827737
7	0.87378
8	0.930831
9	0.964982
10	0.987615
11	1.005352
12	1.024927
13	1.044908
14	1.061874
15	1.092407
16	1.100759
17	1.103233
18	1.110381
19	1.119488
20	1.130457
21	1.138721
22	1.154887
23	1.158677
24	1.154621
25	1.163173
26	1.171036
27	1.172699
28	1.181153
29	1.191972
30	1.203561
31	1.21074
32	1.212894
33	1.204954
34	1.198514
35	1.208949
36	1.212729
37	1.213575
38	1.203017
39	1.209133
40	1.222975
41	1.230257
42	1.235895
43	1.234494
44	1.239294
45	1.2375
46	1.232604
47	1.226173
48	1.217327
49	1.214768
50	1.21141
51	1.199539
52	1.185161
53	1.184827
54	1.182323
55	1.179058
56	1.171758
57	1.166287
58	1.164857
59	1.157858
60	1.15947
61	1.164837
62	1.157276
63	1.157627
64	1.153933
65	1.132787
66	1.120104
67	1.105249
68	1.084971
69	1.075818
70	1.068046
71	1.071849
72	1.078363
73	1.054933
74	1.043997
75	1.019003
76	1.007238
77	0.999777
78	0.994687
79	0.991236
80	0.962306
81	0.9437
82	0.932204
83	0.914728
84	0.893808
85	0.876293
86	0.862804
87	0.833976
88	0.790576
89	0.744295
90	0.701654
91	0.66741
92	0.624077
93	0.57371
94	0.528506
95	0.461134
96	0.396279
97	0.324714
98	0.232823
99	0.127579
100	0.045175