## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=24h_Act1_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/24h_Act1_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Apr 26 13:24:22 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
1268644594	1268621950	6504996	923277859	271073714	27338606	40430552	0	186527	32520871	0.005128	0.72778	0.213676	0.02155	0.03187	0.941456	0.941439	0.005703	0.461071	0.534477	0.345387	1.496421			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.159773
1	0.305254
2	0.461482
3	0.55185
4	0.617107
5	0.69762
6	0.752158
7	0.802926
8	0.860623
9	0.900052
10	0.928148
11	0.95226
12	0.977165
13	0.995626
14	1.017289
15	1.050914
16	1.062012
17	1.071736
18	1.080247
19	1.08897
20	1.105373
21	1.117654
22	1.133776
23	1.145734
24	1.148384
25	1.166928
26	1.179711
27	1.179819
28	1.185
29	1.1976
30	1.209203
31	1.220878
32	1.223562
33	1.213472
34	1.209331
35	1.218074
36	1.228402
37	1.232382
38	1.219995
39	1.22485
40	1.237083
41	1.253111
42	1.258628
43	1.255482
44	1.257718
45	1.248302
46	1.249575
47	1.240875
48	1.228382
49	1.227289
50	1.224042
51	1.210055
52	1.200055
53	1.200702
54	1.202905
55	1.206016
56	1.201817
57	1.192433
58	1.190358
59	1.178214
60	1.175226
61	1.178881
62	1.165638
63	1.161753
64	1.166213
65	1.151098
66	1.131128
67	1.116388
68	1.097921
69	1.08984
70	1.092775
71	1.093138
72	1.09652
73	1.089573
74	1.07992
75	1.04816
76	1.027501
77	1.01809
78	1.003456
79	0.988094
80	0.965327
81	0.957625
82	0.94294
83	0.916992
84	0.895998
85	0.881623
86	0.867514
87	0.843222
88	0.805141
89	0.760864
90	0.716556
91	0.672502
92	0.624092
93	0.586263
94	0.539029
95	0.47555
96	0.41478
97	0.344736
98	0.250957
99	0.136999
100	0.046566