## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=12h_Act1_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/12h_Act1_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Apr 26 13:27:11 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
1247951085	1247921117	13472477	924475312	250583982	25268391	34129213	0	161907	32157744	0.010796	0.740812	0.200801	0.020248	0.027349	0.941613	0.941591	0.00501	0.483351	0.546183	0.314989	1.548516			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.157153
1	0.308251
2	0.472771
3	0.575604
4	0.648194
5	0.728835
6	0.772369
7	0.822298
8	0.875579
9	0.90866
10	0.938304
11	0.959594
12	0.981993
13	1.001148
14	1.014909
15	1.036093
16	1.045279
17	1.058635
18	1.067941
19	1.08231
20	1.090342
21	1.104523
22	1.118578
23	1.128786
24	1.132533
25	1.148025
26	1.156863
27	1.155862
28	1.1629
29	1.174268
30	1.187937
31	1.19932
32	1.198556
33	1.195192
34	1.189082
35	1.199624
36	1.209292
37	1.216769
38	1.210366
39	1.215077
40	1.220424
41	1.232824
42	1.240328
43	1.238238
44	1.2448
45	1.240908
46	1.245424
47	1.237593
48	1.220649
49	1.216743
50	1.213976
51	1.203337
52	1.197379
53	1.207767
54	1.209254
55	1.212651
56	1.206696
57	1.199285
58	1.196798
59	1.186089
60	1.179171
61	1.191227
62	1.18414
63	1.174987
64	1.182034
65	1.1629
66	1.147506
67	1.136867
68	1.112537
69	1.100203
70	1.09258
71	1.088821
72	1.090311
73	1.085124
74	1.078812
75	1.060361
76	1.042291
77	1.027599
78	1.022953
79	1.020502
80	0.983016
81	0.966434
82	0.952877
83	0.924073
84	0.900696
85	0.881926
86	0.873116
87	0.847512
88	0.807733
89	0.767383
90	0.729507
91	0.689985
92	0.640595
93	0.592163
94	0.547153
95	0.476341
96	0.413794
97	0.34422
98	0.25011
99	0.137886
100	0.047153