-----------------------
Start of variable list:
-----------------------
Sample_ID:
CV_CO1
Dataset_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE101650_GermFree
Sample_Labels_DIR:
/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE101650_GermFree/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Mon Apr 29 14:50:56 EDT 2019
Running on node : scc-tm1
Current directory : /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/CAR_Project_Data/GSE101650_GermFree/Scripts/03_Read_Length
Current job ID : 5762863
Current job name : Step_03_CV_CO1
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/5762863.1.linga

Loading required modules...


List files in scratch directory:

total 9.8G
drwx------   2 kkarri waxmanlab 4.0K Apr 29 14:59 .
drwxrwxrwt. 20 root   root       20K Apr 29 14:59 ..
-rw-r--r--   1 kkarri waxmanlab 4.9G Apr 29 14:59 SRR5849975_1.fastq.gz
-rw-r--r--   1 kkarri waxmanlab 4.9G Apr 29 15:04 SRR5849975_2.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing SRR5849975_1.fastq


Processing SRR5849975_2.fastq


Ending Read Length


List files in scratch

total 37G
drwx------   2 kkarri waxmanlab 4.0K Apr 29 15:10 .
drwxrwxrwt. 20 root   root       20K Apr 29 14:59 ..
-rw-r--r--   1 kkarri waxmanlab  19G Apr 29 14:59 SRR5849975_1.fastq
-rw-r--r--   1 kkarri waxmanlab  19G Apr 29 15:04 SRR5849975_2.fastq
==========================================================
Finished on : Mon Apr 29 15:15:01 EDT 2019
0 hours, 24 minutes and 5 seconds elapsed.
==========================================================