Left reads: Input : 47418827 Mapped : 46241544 (97.5% of input) of these: 5760835 (12.5%) have multiple alignments (655050 have >20) Right reads: Input : 47418827 Mapped : 45981454 (97.0% of input) of these: 5739334 (12.5%) have multiple alignments (652674 have >20) 97.2% overall read mapping rate. Aligned pairs: 45493027 of these: 5654376 (12.4%) have multiple alignments 1421315 ( 3.1%) are discordant alignments 92.9% concordant pair alignment rate.