## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=GF_CO3_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/GF_CO3_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:27:43 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
4036141450	4036053748	2089700	2529743631	990925991	163261460	350033786	0	130069	68394661	0.000518	0.626786	0.245519	0.040451	0.086727	0.872305	0.872286	0.001898	0.395331	0.401499	0.4429	1.008234			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.128439
1	0.23191
2	0.362486
3	0.451063
4	0.500028
5	0.565548
6	0.619543
7	0.667291
8	0.711801
9	0.757128
10	0.791223
11	0.821845
12	0.844154
13	0.861148
14	0.888911
15	0.917992
16	0.940165
17	0.96106
18	0.971069
19	0.983749
20	0.999115
21	1.01489
22	1.03306
23	1.043641
24	1.053765
25	1.069757
26	1.079635
27	1.087191
28	1.102481
29	1.112773
30	1.125502
31	1.145666
32	1.160922
33	1.167851
34	1.177159
35	1.184127
36	1.180142
37	1.186358
38	1.199005
39	1.209243
40	1.21308
41	1.220102
42	1.221687
43	1.220023
44	1.214313
45	1.221493
46	1.227225
47	1.221268
48	1.212543
49	1.206339
50	1.207833
51	1.202654
52	1.19762
53	1.205872
54	1.213269
55	1.208327
56	1.207203
57	1.206605
58	1.20757
59	1.206875
60	1.212349
61	1.212897
62	1.203446
63	1.203731
64	1.212915
65	1.200854
66	1.196138
67	1.188765
68	1.185137
69	1.169717
70	1.164038
71	1.173396
72	1.180187
73	1.173256
74	1.161782
75	1.144541
76	1.124635
77	1.109426
78	1.099406
79	1.098165
80	1.082205
81	1.076035
82	1.066311
83	1.051014
84	1.043094
85	1.02949
86	0.998708
87	0.970572
88	0.940929
89	0.902554
90	0.865941
91	0.826365
92	0.788754
93	0.746211
94	0.683497
95	0.610023
96	0.530992
97	0.438721
98	0.315367
99	0.168409
100	0.065249