Left reads: Input : 84704662 Mapped : 52963409 (62.5% of input) of these: 6152961 (11.6%) have multiple alignments (405583 have >20) Right reads: Input : 84704662 Mapped : 51690926 (61.0% of input) of these: 5981365 (11.6%) have multiple alignments (405184 have >20) 61.8% overall read mapping rate. Aligned pairs: 50332616 of these: 5808272 (11.5%) have multiple alignments 144937 ( 0.3%) are discordant alignments 59.3% concordant pair alignment rate.