## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=GF_CO2_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/GF_CO2_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:27:01 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
4626000450	4625935865	9057400	3554498757	827646906	18070649	216666438	0	92630	85482913	0.001958	0.768385	0.178914	0.003906	0.046837	0.947299	0.947286	0.001082	0.427341	0.536884	0.370195	1.542641			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.157559
1	0.276063
2	0.443941
3	0.569137
4	0.628735
5	0.704786
6	0.76454
7	0.818156
8	0.862597
9	0.897163
10	0.914146
11	0.934392
12	0.960358
13	0.976642
14	0.998838
15	1.009993
16	1.02248
17	1.037643
18	1.051098
19	1.063897
20	1.075564
21	1.082873
22	1.087691
23	1.098115
24	1.109951
25	1.126272
26	1.135087
27	1.145776
28	1.156021
29	1.164115
30	1.178836
31	1.197092
32	1.202456
33	1.205904
34	1.198423
35	1.198654
36	1.20141
37	1.212548
38	1.225335
39	1.233938
40	1.230642
41	1.234099
42	1.235417
43	1.240296
44	1.246946
45	1.249693
46	1.252796
47	1.240578
48	1.23365
49	1.226573
50	1.226212
51	1.224777
52	1.214878
53	1.214943
54	1.222087
55	1.222422
56	1.217497
57	1.201711
58	1.195271
59	1.189969
60	1.186971
61	1.185753
62	1.175258
63	1.174101
64	1.179893
65	1.172805
66	1.150709
67	1.140573
68	1.130182
69	1.122991
70	1.117069
71	1.120054
72	1.12223
73	1.118436
74	1.102206
75	1.082799
76	1.0544
77	1.032308
78	1.016874
79	1.012305
80	0.997857
81	0.980321
82	0.961664
83	0.94435
84	0.929021
85	0.910463
86	0.880016
87	0.847561
88	0.8136
89	0.773921
90	0.739527
91	0.696734
92	0.651806
93	0.606008
94	0.550772
95	0.486393
96	0.415227
97	0.333005
98	0.234871
99	0.127775
100	0.052096