## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=CV_CO1_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/CV_CO1_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Tue Apr 30 04:18:25 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
10178547900	10178349925	6062300	6673477352	2371840013	381030105	745942710	0	341773	176005996	0.000596	0.655654	0.233028	0.037435	0.073287	0.888682	0.888665	0.001938	0.392602	0.451032	0.380619	1.247622			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.130329
1	0.250364
2	0.40142
3	0.496795
4	0.54168
5	0.607253
6	0.658402
7	0.707964
8	0.759211
9	0.807931
10	0.84698
11	0.882388
12	0.911006
13	0.924271
14	0.944579
15	0.968961
16	0.985903
17	1.004998
18	1.015693
19	1.029601
20	1.042299
21	1.052419
22	1.069975
23	1.081542
24	1.089229
25	1.106879
26	1.118638
27	1.12587
28	1.145301
29	1.154121
30	1.166273
31	1.179527
32	1.190155
33	1.196041
34	1.204385
35	1.209503
36	1.204801
37	1.206911
38	1.212053
39	1.221553
40	1.226816
41	1.233831
42	1.231619
43	1.228398
44	1.228727
45	1.237176
46	1.242795
47	1.233268
48	1.22596
49	1.219166
50	1.21525
51	1.207404
52	1.201753
53	1.211229
54	1.218148
55	1.211401
56	1.211045
57	1.21281
58	1.210943
59	1.209597
60	1.216141
61	1.215764
62	1.201374
63	1.200073
64	1.203668
65	1.186034
66	1.176656
67	1.168584
68	1.159778
69	1.146465
70	1.142378
71	1.145764
72	1.14274
73	1.136076
74	1.117967
75	1.103401
76	1.090269
77	1.073631
78	1.066155
79	1.060241
80	1.041482
81	1.031808
82	1.016757
83	0.995595
84	0.981257
85	0.96357
86	0.941491
87	0.909531
88	0.872039
89	0.830769
90	0.78865
91	0.741703
92	0.69856
93	0.658406
94	0.603983
95	0.538272
96	0.467405
97	0.381045
98	0.272697
99	0.147629
100	0.058912