G142-M7-Index-19_GTGAAA_BC9WPLANXX_L006_001.R1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	G142-M7-Index-19_GTGAAA_BC9WPLANXX_L006_001.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22668814
Sequences flagged as poor quality	0
Sequence length	50
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTAT	68804	0.303518304927642	TruSeq Adapter, Index 19 (97% over 40bp)
GGGGAAGAGAGGTGGCGACGACGCGGGGGACGACGGGGCCCCGCGGGGAA	44977	0.19840914482777972	No Hit
GCCGGCCCCCCCGAGTGTCCGGGCCCCCCGCCCCACCGGGGGCCCGCTGG	41011	0.18091374343624683	No Hit
GGAAGAAGGAGGGGGGAAGAGAGGTGGCGACGACGCGGGGGACGACGGGG	37195	0.16408004406406085	No Hit
GACGGGAAGAAGGAGGGGGGAAGAGAGGTGGCGACGACGCGGGGGACGAC	30246	0.13342559518111535	No Hit
CGGGAAGAAGGAGGGGGGAAGAGAGGTGGCGACGACGCGGGGGACGACGG	26739	0.11795500196878407	No Hit
GTCCGCGGGGCCCGACGCCGCGGGGGCGAAACCCGGCGCGCGGAGGGGAG	22905	0.10104189835427649	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGAAACG	10015	37.82746	35
AAACGAT	9490	36.888027	37
CGTGAAA	10345	36.687794	33
CTCGTAT	9465	36.6383	44
AACGATC	8795	36.606773	38
ATCTCGT	8870	36.34829	42
ACGATCT	8875	36.2044	39
ACGTGAA	10535	36.172062	32
GTCACGT	10890	35.033546	29
GATCTCG	9415	34.197037	41
GAAACGA	11045	34.18049	36
AGTCACG	11350	33.75317	28
TCACGTG	11260	33.74581	30
ACGTCTG	11825	33.393147	15
CGTCTGA	11925	33.15014	16
GATCGGA	11825	33.089718	1
CACGTGA	11525	32.988937	31
TCTCGTA	10130	32.715866	43
ATCGGAA	12440	31.52306	2
CGATCTC	10700	30.45965	40