G138-M11-Index-2_CGATGT_BC9WPLANXX_L002_001.R1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	G138-M11-Index-2_CGATGT_BC9WPLANXX_L002_001.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16919179
Sequences flagged as poor quality	0
Sequence length	50
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC	67988	0.4018398292257561	TruSeq Adapter, Index 2 (100% over 50bp)
GTCCAGAGTCGCCGCCGCCGCCGGCCCCCCCGAGTGTCCGGGCCCCCCGC	31781	0.18784008372983108	No Hit
GCCGGCCCCCCCGAGTGTCCGGGCCCCCCGCCCCACCGGGGGCCCGCTGG	30979	0.18309990100583484	No Hit
CTGGCTTCCTCGGCCCCGGGATTCGGCGAAAGCTGCGGCCGGAGGGCTGT	26195	0.1548242973255381	No Hit
GCGGCGACGGGTATCTGGCTTCCTCGGCCCCGGGATTCGGCGAAAGCTGC	23594	0.139451210960059	No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC	19773	0.1168673728199223	No Hit
GTTCAACGTGACGGGCGAGAGGGCGGCCCCCTTTCCGGCCGCACCCCGTT	19715	0.11652456658801234	No Hit
CTCGGCTTCGTCGGGAGACGCGTGACCGACGGTCCCCCCGGGACCCGACG	19483	0.11515334166037253	No Hit
GGAAGAAGGAGGGGGGAAGAGAGGTGGCGACGACGCGGGGGACGACGGGG	17046	0.1007495694678802	No Hit
GGGGAAGAGAGGTGGCGACGACGCGGGGGACGACGGGGCCCCGCGGGGAA	17026	0.10063136042239403	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATCTCG	7360	41.035538	39
GATCGGA	8450	39.87254	1
CGATGTA	8020	39.606144	34
TCACCGA	8120	39.47439	30
CACCGAT	8140	39.296432	31
GTCACCG	8340	39.118107	29
CGTCTGA	8800	38.763233	16
ACGTCTG	8985	38.088493	15
ACCGATG	8515	37.564598	32
CCGATGT	8575	37.223793	33
CTCGTAT	8530	36.872696	42
ACACGTC	9590	35.906284	13
TCGGAAG	9600	35.247818	3
TCGTATG	9105	35.026566	43
GTATCTC	8860	34.262054	38
CGGAAGA	9930	34.181053	4
CACACGT	10170	33.86084	12
CACGTCT	10160	33.853096	14
GATGTAT	9025	33.833267	35
TCTCGTA	9520	31.8164	41